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1

Interactive and scalable biology cloud experimentation for scientific inquiry and education

Hossain, Zahid, Bumbacher, Engin W, Chung, Alice M, Kim, Honesty, Litton, Casey, Walter, Ashley D, Pradhan, Sachin N, Jona, Kemi, Blikstein, Paulo, Riedel-Kruse, Ingmar H

Journal:

Nature Biotechnology

Year:

2016

Language:

english

File:

PDF, 2.26 MB

english, 2016

2

A Synthetic Bacterial Cell-Cell Adhesion Toolbox for Programming Multicellular Morphologies and Patterns

Glass, David S., Riedel-Kruse, Ingmar H.

Journal:

Year:

2018

Language:

english

File:

PDF, 2.45 MB

english, 2018

3

Scientific Discovery Games for Biomedical Research

Das, Rhiju, Keep, Benjamin, Washington, Peter, Riedel-Kruse, Ingmar H.

Journal:

Annual Review of Biomedical Data Science

Year:

2019

Language:

english

File:

PDF, 5.22 MB

english, 2019

4

Innocent Fun or “Microslavery”?

Harvey, Hayden, Havard, Molly, Magnus, David, Cho, Mildred K., Riedel-Kruse, Ingmar H.

Journal:

Hastings Center Report

Year:

2014

Language:

english

File:

PDF, 349 KB

english, 2014

5

[ACM Press the 2016 CHI Conference Extended Abstracts - Santa Clara, California, USA (2016.05.07-2016.05.12)] Proceedings of the 2016 CHI Conference Extended Abstracts on Human Factors in Computing Systems - CHI EA '16 - Interactive Biotechnology

Kim, Honesty, Gerber, Lukas C., Riedel-Kruse, Ingmar H.

Year:

2016

Language:

english

File:

PDF, 1.95 MB

english, 2016

6

[IEEE 2015 12th International Conference on Remote Engineering and Virtual Instrumentation (REV) - Bangkok, Thailand (2015.2.25-2015.2.27)] Proceedings of 2015 12th International Conference on Remote Engineering and Virtual Instrumentation (REV) - Real-time and turn-based biology online experimentation

Hossain, Zahid, Chung, Alice M., Riedel-Kruse, Ingmar H.

Year:

2015

Language:

english

File:

PDF, 919 KB

english, 2015

7

Signaling Delays Preclude Defects in Lateral Inhibition Patterning

Glass, David S., Jin, Xiaofan, Riedel-Kruse, Ingmar

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 41 KB

english, 2015

8

Patterned Biofilms for Engineering Microbial Consortia

Jin, Xiaofan, Glass, David S., Riedel-Kruse, Ingmar

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 34 KB

english, 2015

9

A Genetically Encoded Toolbox of Orthogonal Adhesins for Bacterial Self-Assembly

Glass, David S., Riedel-Kruse, Ingmar H.

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 44 KB

english, 2018

10

Molecular motors in materials science

Hess, Henry, Katira, Parag, Riedel-Kruse, Ingmar H., Tsitkov, Stanislav

Journal:

Year:

2019

File:

PDF, 2.03 MB

2019

11

Actomyosin Generated Tension Coordinates Cell Movements during Early Zebrafish Development

Chai, Jack, Hamilton, Andrea, Krieg, Michael, Buckley, Craig, Riedel-Kruse, Ingmar, Dunn, Alexander

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 40 KB

english, 2014

12

Microfluidic assembly kit based on laser-cut building blocks for education and fast prototyping

Gerber, Lukas C., Kim, Honesty, Riedel-Kruse, Ingmar H.

Journal:

Biomicrofluidics

Year:

2015

Language:

english

File:

PDF, 1.24 MB

english, 2015

13

“Learning on a chip:” Microfluidics for formal and informal science education

Rackus, Darius G., Riedel-Kruse, Ingmar H., Pamme, Nicole

Journal:

Biomicrofluidics

Year:

2019

Language:

english

File:

PDF, 7.20 MB

english, 2019

14

A Biotic Game Design Project for Integrated Life Science and Engineering Education

Cira, Nate J., Chung, Alice M., Denisin, Aleksandra K., Rensi, Stefano, Sanchez, Gabriel N., Quake, Stephen R., Riedel-Kruse, Ingmar H.

Journal:

Year:

2015

Language:

english

File:

PDF, 926 KB

english, 2015

15

[ACM Press the 33rd Annual ACM Conference - Seoul, Republic of Korea (2015.04.18-2015.04.23)] Proceedings of the 33rd Annual ACM Conference on Human Factors in Computing Systems - CHI '15 - Trap it!

Lee, Seung Ah, Bumbacher, Engin, Chung, Alice M., Cira, Nate, Walker, Byron, Park, Ji Young, Starr, Barry, Blikstein, Paulo, Riedel-Kruse, Ingmar H.

Year:

2015

Language:

english

File:

PDF, 15.40 MB

english, 2015

16

A Model for Adult Organ Resizing Demonstrates Stem Cell Scaling through a Tunable Commitment Rate

Du, XinXin, O’Brien, Lucy Erin, Riedel-Kruse, Ingmar Hans

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 1.77 MB

english, 2017

17

Biofilm Lithography enables high-resolution cell patterning via optogenetic adhesin expression

Jin, Xiaofan, Riedel-Kruse, Ingmar H.

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 1.32 MB

english, 2018

18

A Force Balance Can Explain Local and Global Cell Movements during Early Zebrafish Development

Chai, Jack, Hamilton, Andrea L., Krieg, Michael, Buckley, Craig D., Riedel-Kruse, Ingmar H., Dunn, Alexander R.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 1.13 MB

english, 2015

19

Optically Patterned Biofilms via Transcriptional Control of Adhesin Expression

Jin, Xiaofan, Riedel-Kruse, Ingmar

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 44 KB

english, 2018

20

Active Phase and Amplitude Fluctuations of Flagellar Beating

Ma, Rui, Klindt, Gary S., Riedel-Kruse, Ingmar H., Jülicher, Frank, Friedrich, Benjamin M.

Journal:

Physical Review Letters

Year:

2014

Language:

english

File:

PDF, 1.21 MB

english, 2014

21

Coupling vs. noise: The rise and fall of synchrony in the segmentation clock

Ingmar H. Riedel-Kruse, Mueller Claudia, Oates C. Andrew

Journal:

Developmental Biology

Year:

2008

Language:

english

File:

PDF, 59 KB

english, 2008

22

Device and programming abstractions for spatiotemporal control of active micro-particle swarms

Lam, Amy T., Samuel-Gama, Karina G., Griffin, Jonathan, Loeun, Matthew, Gerber, Lukas C., Hossain, Zahid, Cira, Nate J., Lee, Seung Ah, Riedel-Kruse, Ingmar H.

Journal:

Year:

2017

Language:

english

File:

PDF, 2.12 MB

english, 2017

23

How molecular motors shape the flagellar beat

Riedel‐Kruse, Ingmar H., Hilfinger, Andreas, Howard, Jonathon, Jülicher, Frank

Journal:

Year:

2007

Language:

english

File:

PDF, 759 KB

english, 2007

24

Cloud Experimentation for Biology: Systems Architecture and Utility for Online Education and Research

Hossain, Zahid, Jin, Xiaofan, Baumbacher, Engin, Mira Chung, Alice, Koo, Stephen, David Shapiro, Jordan, YTram Truong, Cynthia, Choi, Sean, Blikstein, Paulo, Riedel-Kruse, Ingmar Hans

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 38 KB

english, 2015

25

Measuring Mechanical Force during Zebrafish Development using an Expressible Tension Sensor

Hamilton, Andrea, Wu, Victoria, Dunn, Alex, Riedel-Kruse, Ingmar

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 41 KB

english, 2015

26

[ACM Press the 33rd Annual ACM Conference - Seoul, Republic of Korea (2015.04.18-2015.04.23)] Proceedings of the 33rd Annual ACM Conference on Human Factors in Computing Systems - CHI '15 - Interactive Cloud Experimentation for Biology

Hossain, Zahid, Blikstein, Paulo, Riedel-Kruse, Ingmar H., Jin, Xiaofan, Bumbacher, Engin W., Chung, Alice M., Koo, Stephen, Shapiro, Jordan D., Truong, Cynthia Y., Choi, Sean, Orloff, Nathan D.

Year:

2015

Language:

english

File:

PDF, 3.33 MB

english, 2015

27

High-resolution Patterned Biofilm Deposition Using pDawn-Ag43

Jin, Xiaofan, Riedel-Kruse, Ingmar H.

Journal:

Journal of Visualized Experiments

Year:

2018

Language:

english

File:

PDF, 551 KB

english, 2018

28

First-hand, immersive full-body experiences with living cells through interactive museum exhibits

Lam, Amy T., Ma, Joyce, Barr, Cory, Lee, Seung Ah, White, Adam K., Yu, Kristina, Riedel-Kruse, Ingmar H.

Journal:

Nature Biotechnology

Year:

2019

Language:

english

File:

PDF, 1.43 MB

english, 2019

29

Signaling Delays Preclude Defects in Lateral Inhibition Patterning

Glass, David S., Jin, Xiaofan, Riedel-Kruse, Ingmar H.

Journal:

Physical Review Letters

Year:

2016

Language:

english

File:

PDF, 1.04 MB

english, 2016

30

A Programming Toolkit for Automating Biophysics Experiments with Microorganism Swarms

Washington, Peter, Samuel-Gama, Karina, Riedel-Kruse, Ingmar

Journal:

Biophysical Journal

Year:

2018

File:

PDF, 42 KB

2018

31

Polygonal motion and adaptable phototaxis via flagellar beat switching in the microswimmer Euglena gracilis

Tsang, Alan C. H., Lam, Amy T., Riedel-Kruse, Ingmar H.

Journal:

Year:

2018

Language:

english

File:

PDF, 5.53 MB

english, 2018

32

Author Correction: Polygonal motion and adaptable phototaxis via flagellar beat switching in the microswimmer Euglena gracilis

Tsang, Alan C. H., Lam, Amy T., Riedel-Kruse, Ingmar H.

Journal:

Year:

2018

Language:

english

File:

PDF, 945 KB

english, 2018

33

Interactive programming paradigm for real-time experimentation with remote living matter

Washington, Peter, Samuel-Gama, Karina G., Goyal, Shirish, Ramaswami, Ashwin, Riedel-Kruse, Ingmar H.

Journal:

Proceedings of the National Academy of Sciences

Year:

2019

File:

PDF, 1.34 MB

2019

34

Dynamics and Optimal Behavioral Strategies of Motile Networks

Riedel-Kruse, Ingmar H., Cira, Nate

Journal:

Biophysical Journal

Year:

2020

File:

PDF, 44 KB

2020

35

Integrated bioprinting and imaging for scalable, networkable desktop experimentation

Orloff, Nathan D., Truong, Cynthia, Cira, Nathan, Koo, Stephen, Hamilton, Andrea, Choi, Sean, Wu, Victoria, Riedel-Kruse, Ingmar H.

Journal:

Year:

2014

Language:

english

File:

PDF, 5.47 MB

english, 2014

36

Versatile Phototactic Behaviors of the Chiral Microswimmer Euglena gracilis

Tsang, Alan, Lam, Amy, Riedel-Kruse, Ingmar H.

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 49 KB

english, 2018

37

[ACM Press the Ninth International Conference - Stanford, California, USA (2015.01.15-2015.01.19)] Proceedings of the Ninth International Conference on Tangible, Embedded, and Embodied Interaction - TEI '14 - Tangible Interactive Microbiology for Informal Science Education

Lee, Seung Ah, Chung, Alice M., Cira, Nate, Riedel-Kruse, Ingmar H.

Year:

2015

Language:

english

File:

PDF, 11.34 MB

english, 2015

38

Shape Mode Analysis Exposes Movement Patterns in Biology: Flagella and Flatworms as Case Studies

Werner, Steffen, Rink, Jochen C., Riedel-Kruse, Ingmar H., Friedrich, Benjamin M., Wood, Chris D.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.35 MB

english, 2014

39

Regulation of epithelial migration by epithelial cell adhesion molecule requires its Claudin-7 interaction domain

Barth, Angela I. M., Kim, Honesty, Riedel-Kruse, Ingmar H., Zegers, Mirjam M.

Journal:

Year:

2018

Language:

english

File:

PDF, 18.13 MB

english, 2018

40

Synthetic Cell-cell Adhesion Mediates Aggregation and Boundary Formation in Swarming E. coli

Kim, Jung, Riedel-Kruse, Ingmar H.

Journal:

Biophysical Journal

Year:

2020

File:

PDF, 47 KB

2020

41

How Molecular Motors Shape The Flagellar Beat

Hilfinger, Andreas, Riedel-Kruse, Ingmar, Howard, Jonathon, Jülicher, Frank

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 35 KB

english, 2009

42

Design Guidelines and Empirical Case Study for Scaling Authentic Inquiry-based Science Learning via Open Online Courses and Interactive Biology Cloud Labs

Hossain, Zahid, Bumbacher, Engin, Brauneis, Alison, Diaz, Monica, Saltarelli, Andy, Blikstein, Paulo, Riedel-Kruse, Ingmar H.

Journal:

International Journal of Artificial Intelligence in Education

Year:

2017

Language:

english

File:

PDF, 2.35 MB

english, 2017

43

Correction: LudusScope: Accessible Interactive Smartphone Microscopy for Life-Science Education

Kim, Honesty, Gerber, Lukas Cyrill, Chiu, Daniel, Lee, Seung Ah, Cira, Nate J., Xia, Sherwin Yuyang, Riedel-Kruse, Ingmar H.

Journal:

Year:

2016

Language:

english

File:

PDF, 274 KB

english, 2016

44

Biophysics of Collective Phototaxis of Euglena gracilis

Tsang, Alan C.H., Lam, Amy T., Riedel-Kruse, Ingmar H.

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 41 KB

english, 2018

45

Engineering and modeling of multicellular morphologies and patterns

Kim, Honesty, Jin, Xiaofan, Glass, David S, Riedel-Kruse, Ingmar H

Journal:

Current Opinion in Genetics & Development

Year:

2020

File:

PDF, 2.16 MB

2020

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